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Abstract Profiles of oxygen measurements from Argo profiling floats now vastly outnumber shipboard profiles. To correct for drift, float oxygen data are often initially adjusted to deployment casts, ship‐based climatologies, or, recently, measurements of atmospheric oxygen for in situ calibration. Air calibration enables accurate measurements in the upper ocean but may not provide similar accuracy at depth. Using a quality controlled shipboard data set, we find that the entire Argo oxygen data set is offset relative to shipboard measurements (float minus ship) at pressures of 1,450–2,000 db by a median of −1.9 μmol kg⁻¹(mean ± SD of −1.9 ± 3.9, 95% confidence interval around the mean of {−2.2, −1.6}) and air‐calibrated floats are offset by −2.7 μmol kg⁻¹(−3.0 ± 3.4 (CI_95%{−3.7, −2.4}). The difference between float and shipboard oxygen is likely due to offsets in the float oxygen data and not oxygen changes at depth or biases in the shipboard data set. In addition to complicating the calculation of long‐term ocean oxygen changes, these float oxygen offsets impact the adjustment of float nitrate and pH measurements, therefore biasing important derived quantities such as the partial pressure of CO₂(pCO₂) and dissolved inorganic carbon. Correcting floats with air‐calibrated oxygen sensors for the float‐ship oxygen offsets alters float pH by a median of 3.0 mpH (3.1 ± 3.7) and float‐derived surfacepCO₂by −3.2 μatm (−3.2 ± 3.9). This adjustment to floatpCO₂represents half, or more, of the bias in float‐derivedpCO₂reported in studies comparing floatpCO₂to shipboardpCO₂measurements.